The move came 10 days after the football club, who finished third in the MSL, announced that Spaniard Cesar Ferrando Jimenez would be taking charge on Aug 18, shortly before the Malaysia Cup tournament kicks off.
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According to a Facebook post on the team's fan page, Fandi will remain as the team manager even though he has been relieved of coaching responsibilities.
Coach of Johor FA, a second-tier side, Azmi Mohamed will be the interim coach.
The post also said that Fandi will be present at the team's training sessions.